WE FOUND IT!!!!
My Buisness partner was walking the Jr. our LAZY guard dog, and spotted the MJ parked about 4 blocks from the shop! Stereo is gone, steering column is all messed up, and they punched out the door lock. Also my dimond plate tool box was taken from the bed. All in all not to bad really. I am Taking a break from putting in a column from a 93 XJ right now. I will need a new door due to the accident and now this.
I have some cool ideas for what to do to it now Keep an eye open for a build thread in the future.