I wouldn't even bother with anything but an 8.8 or an MJ D44. Same amount of work as an 8.25 for an 8.8 and they're significantly stronger. In hindsight I'd have done that with an SOA swap rather than drop $500 on the HC 4.5" leaf springs. Flatter springs will ride and flex better and it's significantly cheaper than the HC springs are. Get some 5" coils for the front, adjustable control arms, some Bilstein 5100s and you've got a pretty cheap 5" lift. Spend the money on building the axles and upgrade the steering.
At a minimum for 5" you're going to need coils, shocks, brake lines, control arms (you want adjustable, much better for fixing caster angle), and leaf springs or shackles. Suspension and steering are the same on Cherokees and Comanches in the front. Cherokee shackles will work in the rear, but whatever size they say they are they'll be an inch to an inch and a half less on a Comanche.